Model Combined Flu HAI + RNA-Seq Expression
Data set to use for the modeling:
Baylor
Emory
Mayo
Data sets to use for prediction:
Baylor
Emory
Mayo
GMM clustering based on:
Train&Test data
All data
Number of GMM components
Two
Three
Regression type
Ridge
Lasso
elasticNet
Lambda
Lambda min
Lambda max
Number of filtered genes
Number of top genes
Use reGAIN?
File type:
csv
tsv
Download Top Genes
Download Source Code and Data Sets
Click Here to Download Code and Data
Stage-1
Stage-2
Stage-3
Stage-4
Stage-5
Stage-6
Stage-7
Stage-8
Run day-0 HAI modeling
Display day-0 HAI modeling residual plots
Display combined day-0 HAI boxplot
Run GMM clustering and display the plot
Display barplot of number of subjects in each group
Run gene modeling for each group
Display piecewise plots
Display table of R-squared